Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009234.1_3689_3921_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3689 - 3921

Intron Length:

233

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTGAGTCCC

5'SS Class:

major

3'SS Sequence:

CCGTCTCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

GGGTGCTCACCC

Flanking Amino Acid:

ATLTSQLSANANLVAAFEQS

Intron Amino Acid Position:

718

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.3

65.8

40.2

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

73.3

0.53

0.8

64.7

36.4

Minor 5ss

31.4

-2.1

2.8

36.4

32.8

Minor BPS

43.5

-0.5

2.1

52.03

44.9

Associated Gene:

Gene:

NAV1

Ensembl Gene ID:

ENSAPLG00000023628

Chromosome:

PEDO01009234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032221

58 - 22627

22570

ENSAPLT00000030141

286 - 11213

10928