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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009234.1_4000_4109_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4000 - 4109
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCCCCCCGACCC
Flanking Amino Acid:
SSAEEKMQSEQIRKLRRELE
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
40.5
-0.7
1.9
44.96
43.1

Associated Gene:

Gene:
NAV1
Ensembl Gene ID:
ENSAPLG00000023628
Chromosome:
PEDO01009234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030141
286 - 11213
10928