Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009234.1_4134_4334_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4134 - 4334

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCC|GTAAGAGCC

5'SS Class:

major

3'SS Sequence:

CTCGCGCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCTC

U12 Branch Point Sequence:

TCTCTCTGCCCT

Flanking Amino Acid:

ASSASSTYSSAEEKMQSEQI

Intron Amino Acid Position:

684

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.3

58.2

39.8

Major BPS

28.8

-1.3

4.1

60.7

37.6

Major PPT

61.8

0.27

1.1

53.4

41.5

Minor 5ss

33.6

-1.9

3.4

47.8

41.1

Minor BPS

-0.9

3.5

65.4

45.2

Associated Gene:

Gene:

NAV1

Ensembl Gene ID:

ENSAPLG00000023628

Chromosome:

PEDO01009234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030141

286 - 11213

10928