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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009234.1_8279_11166_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8279 - 11166
Intron Length:
2888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTCGCTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GGGGCCTCACGC
Flanking Amino Acid:
RMRRAPRLAASWDESSSISS
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73
34.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
78.3
0.64
0.9
72.4
37.7
Minor 5ss
32.1
-2
3.3
43.2
44.2
Minor BPS
40.1
-0.7
2
43.7
43.8

Associated Gene:

Gene:
NAV1
Ensembl Gene ID:
ENSAPLG00000023628
Chromosome:
PEDO01009234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030141
286 - 11213
10928