Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009234.1_8279_16511_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8279 - 16511

Intron Length:

8233

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTCGCTGTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAC

U12 Branch Point Sequence:

GGGGCCTCACGC

Flanking Amino Acid:

TLTEDDDITTGWDESSSISS

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

75.2

36.3

Major BPS

54.7

0.12

1.2

59.2

39.1

Major PPT

78.3

0.64

0.9

72.4

37.7

Minor 5ss

33.5

-1.9

3.1

36.8

40.4

Minor BPS

40.1

-0.7

43.7

43.8

Associated Gene:

Gene:

NAV1

Ensembl Gene ID:

ENSAPLG00000023628

Chromosome:

PEDO01009234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032221

58 - 22627

22570