Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009249.1_6609_7642_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6609 - 7642

Intron Length:

1034

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTGCTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCTGAT

U12 Branch Point Sequence:

TTTTCGCTGATT

Flanking Amino Acid:

ERCIEYIEATGLSTEGIYRV

Intron Amino Acid Position:

1281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

69.2

36.8

Major BPS

63.8

0.34

1.2

54.7

43.1

Major PPT

0.81

0.8

77.8

36.7

Minor 5ss

30.3

-2.3

3.5

Minor BPS

0.21

2.4

83.81

37.4

Associated Gene:

Gene:

ARHGAP35

Ensembl Gene ID:

ENSAPLG00000002888

Chromosome:

PEDO01009249.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002932

1793 - 15272

13480