Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009254.1_839_935_F

Intron Information:

Intron Rank:

128915

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

839 - 935

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-TG

5'SS Sequence:

TTG|GTGGTGCTG

5'SS Class:

weak_major

3'SS Sequence:

GGGCACGCTGGTG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGGCAC

U12 Branch Point Sequence:

GTTTTGGGCACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.1

0.15

1.1

45.9

43.5

Major BPS

-0.3

1.5

48.8

46.3

Major PPT

26.4

-1.3

3.2

31.5

Minor 5ss

27.7

-2.6

3.5

34.5

43.8

Minor BPS

34.8

-1.3

2.7

47.98

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019359

Chromosome:

PEDO01009254.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027738

21 - 1128

1108