Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009272.1_606_753_F

Intron Information:

Intron Rank:

135227

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

606 - 753

Intron Length:

148

Sequence Information:

Terminal Dinucleotides:

GT-AT

5'SS Sequence:

CAT|GTCACTGTC

5'SS Class:

weak_major

3'SS Sequence:

TCATCACCACCAT|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCATCAC

U12 Branch Point Sequence:

CCGTCATCACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.5

0.15

1.5

64.9

40.9

Major BPS

65.7

0.39

1.1

67.9

37.7

Major PPT

38.2

-0.6

3.1

48.9

39.3

Minor 5ss

40.6

-1

3.3

57.5

40.4

Minor BPS

44.1

-0.4

52.22

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022751

Chromosome:

PEDO01009272.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029710

21 - 1472

1452