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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009278.1_1364_1652_R

Intron Information:

Intron Rank:
139355
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1364 - 1652
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
CTGACCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCTCTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64.3
0.32
1.1
63.7
37
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
48.7
-0
1.8
65.4
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022435
Chromosome:
PEDO01009278.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034738
190 - 2461
2272