About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009291.1_1093_1551_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1093 - 1551
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTGTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
SELHGNMYIEVCTSCTPNRE
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.8
0.51
1
65.8
39.7
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
SIRT7
Ensembl Gene ID:
ENSAPLG00000015312
Chromosome:
PEDO01009291.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015951
21 - 3994
3974