Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009291.1_2210_2378_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2210 - 2378

Intron Length:

169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTGTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTCAA

U12 Branch Point Sequence:

TTTTTCTTGTCA

Flanking Amino Acid:

WTLLQKGRSIRATDLSEAEP

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

66.8

0.42

1.1

69.4

37.7

Major PPT

87.4

0.84

0.8

88.7

28.3

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

-0

3.5

81.71

33.5

Associated Gene:

Gene:

SIRT7

Ensembl Gene ID:

ENSAPLG00000015312

Chromosome:

PEDO01009291.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015951

21 - 3994

3974