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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009305.1_1609_2331_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1609 - 2331
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGCACTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTATACTAATA
Flanking Amino Acid:
PLGFIKVLQWIFSIFAFATC
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
43.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.5
0.48
0.9
65.8
35.8
Minor 5ss
29.2
-2.4
2.5
25.2
36.6
Minor BPS
47.5
-0.1
1.9
62.74
37

Associated Gene:

Gene:
SYPL1
Ensembl Gene ID:
ENSAPLG00000025094
Chromosome:
PEDO01009305.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023203
470 - 2400
1931