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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009310.1_1431_1513_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1431 - 1513
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TGAGCCTGACGC
Flanking Amino Acid:
VADRLTETMEDGRTMDYADV
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
75.4
28.5
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
91.5
0.93
0.6
88.6
20.8
Minor 5ss
26.7
-2.7
2.8
30.6
42.8
Minor BPS
43.6
-0.5
2
52.69
44.4

Associated Gene:

Gene:
POLR3C
Ensembl Gene ID:
ENSAPLG00000023392
Chromosome:
PEDO01009310.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030340
21 - 3581
3561
ENSAPLT00000022831
21 - 3581
3561