Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009310.1_2168_2267_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2168 - 2267

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCGGGGA

5'SS Class:

major

3'SS Sequence:

CCCCCCCACGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CCCCCCTCACCC

Flanking Amino Acid:

VSAVANRMDQTSSEIVRTML

Intron Amino Acid Position:

431

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

60.3

40.6

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

63.6

0.31

0.8

57.2

25.7

Minor 5ss

22.1

-3.2

3.4

43.5

Minor BPS

46.2

-0.3

1.9

51.61

45.6

Associated Gene:

Gene:

POLR3C

Ensembl Gene ID:

ENSAPLG00000023392

Chromosome:

PEDO01009310.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030340

21 - 3581

3561

ENSAPLT00000022831

21 - 3581

3561