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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009310.1_3383_3485_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3383 - 3485
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCCCCCCCACCC
Flanking Amino Acid:
MLSENFVALQEIPKTPDHAP
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
75.8
0.58
0.9
69.9
36.6
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
39.8
-0.7
2
44.52
43.6

Associated Gene:

Gene:
POLR3C
Ensembl Gene ID:
ENSAPLG00000023392
Chromosome:
PEDO01009310.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030340
21 - 3581
3561