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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009311.1_49033_49155_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49033 - 49155
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CATCCCCAAACC
Flanking Amino Acid:
KQYSQDPVVEVAETCQLAVK
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
71.8
0.49
0.8
65.4
30.5
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
48.4
-0.1
2
61.91
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029230
Chromosome:
PEDO01009311.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019818
47230 - 50471
3242