Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009311.1_49916_50078_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49916 - 50078

Intron Length:

163

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TCCCCGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

CCCCTCTGAGCC

Flanking Amino Acid:

VTWCSAWRRAEPDGAAVPGA

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

66.2

39.6

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

67.9

0.4

0.8

29.2

Minor 5ss

-2.5

33.4

41.6

Minor BPS

44.9

-0.4

1.7

47.77

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029230

Chromosome:

PEDO01009311.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019818

47230 - 50471

3242