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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009311.1_52657_52763_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
52657 - 52763
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCCTTGAG
5'SS Class:
weak_major
3'SS Sequence:
CGCTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GCCGCCTCACGC
Flanking Amino Acid:
GRPPCPAPLELLIARRRRTS
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.4
56.2
43
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
72.8
0.51
0.9
65
36.3
Minor 5ss
26.4
-2.7
3.1
32.1
42.3
Minor BPS
39.9
-0.7
2
42.35
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026491
Chromosome:
PEDO01009311.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043877
51538 - 53129
1592