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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009322.1_2943_3035_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2943 - 3035
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TATGCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TATTCCTTATGC
Flanking Amino Acid:
RKQVQQAAQIEEKAERLEEQ
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82.1
0.72
0.9
73.3
41.6
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
64
0.42
1.9
75.55
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026260
Chromosome:
PEDO01009322.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033810
1326 - 6425
5100