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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009325.1_62231_62325_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62231 - 62325

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCGG

5'SS Class:

strong_major

3'SS Sequence:

CGTCCCTGCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

CGTTCCTCACAC

Flanking Amino Acid:

SCLAALVIITDRHGLKEPKR

Intron Amino Acid Position:

504

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

60.4

45.8

Major BPS

72.4

0.56

73.5

32.5

Major PPT

66.6

0.37

0.9

60.8

35.1

Minor 5ss

24.7

-2.9

29.5

43.3

Minor BPS

48.5

-0.1

60.74

44.1

Associated Gene:

Gene:

NR4A1

Ensembl Gene ID:

ENSAPLG00000029349

Chromosome:

PEDO01009325.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037480

59540 - 62977

3438