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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009337.1_364_475_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
364 - 475
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
CTGCCCTAATCC
Flanking Amino Acid:
QEEQRVLDDEWERVRALVSR
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
75.8
0.58
0.8
69.4
31.1
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
48.3
-0.1
2
59.3
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023388
Chromosome:
PEDO01009337.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035979
190 - 2492
2303