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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009365.1_112_173_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112 - 173
Intron Length:
62

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCCAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
GCAGCCAGACTA
Flanking Amino Acid:
KGQKMAQGTDEDAIIDI
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
70.9
35.9
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
13.7
-4.2
3.5
20.8
37.5
Minor BPS
39
-0.8
1.8
42.54
38.9

Associated Gene:

Gene:
ANXA4
Ensembl Gene ID:
ENSAPLG00000005605
Chromosome:
PEDO01009365.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005850
90 - 4411
4322