Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009365.1_3075_3561_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3075 - 3561

Intron Length:

487

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTATCTCTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTACTGACCT

Flanking Amino Acid:

GDLEDALLAVVKCMRNKPAY

Intron Amino Acid Position:

217

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.7

34.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

86.1

0.81

0.8

80.6

31.3

Minor 5ss

31.4

-2.1

3.2

35.2

41.4

Minor BPS

61.5

0.44

1.9

86.18

39.4

Associated Gene:

Gene:

ANXA4

Ensembl Gene ID:

ENSAPLG00000005605

Chromosome:

PEDO01009365.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005850

90 - 4411

4322