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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009366.1_1266_1303_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1266 - 1303
Intron Length:
38

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACA|GCGAGGTGC
5'SS Class:
weak_major
3'SS Sequence:
GCTTCTCAACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGCTTCTCAACC
Flanking Amino Acid:
PAWRAALVGTLDGFEATKNI
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1.3
54.2
40.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
66.8
0.38
1
59.6
40.8
Minor 5ss
23.5
-3
4
37.3
41.6
Minor BPS
60.4
0.31
1.6
65.51
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020340
Chromosome:
PEDO01009366.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040286
4 - 1351
1348