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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009371.1_27663_27749_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
27663 - 27749
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGGTC
5'SS Class:
major
3'SS Sequence:
CAACCTGTGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACATTCTCACCT
Flanking Amino Acid:
TAFCTLEKPVKFQEKGNLEV
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.2
34.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
48.8
-0
1.2
47.4
39.1
Minor 5ss
30
-2.3
3.7
40.9
40
Minor BPS
49.7
0.06
1.8
66.91
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020475
Chromosome:
PEDO01009371.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042729
20503 - 30408
9906