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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009390.1_1831_1938_R

Intron Information:

Intron Rank:
155022
Intron Class:
major
Intron Phase:
Intron Coordinates:
1831 - 1938
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCACC
5'SS Class:
major
3'SS Sequence:
CTTGCTTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CTTGCTTTGGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
69.7
41.3
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
75.7
0.58
1
72.5
37.6
Minor 5ss
36.1
-1.6
2.7
44.7
42.9
Minor BPS
43.1
-0.5
3.5
65.32
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030887
Chromosome:
PEDO01009390.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028578
313 - 2685
2373