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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009401.1_1162_1752_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1162 - 1752
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGCGTGTTAATT
Flanking Amino Acid:
MVVMHDPVYRIFYVSHDSQ
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.5
35.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.8
0.54
0.8
65.4
36.2
Minor 5ss
32.9
-2
3.3
44.7
43.3
Minor BPS
49
0
2.1
67.31
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014990
Chromosome:
PEDO01009401.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015612
21 - 1781
1761