About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009401.1_472_805_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
472 - 805
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACGTCC
5'SS Class:
major
3'SS Sequence:
ATCTCGTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATCC
Flanking Amino Acid:
DKSAEEQPPEVHQIKGSKIT
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
63.5
37.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.8
0.4
1.1
67.5
37.5
Minor 5ss
38.1
-1.3
3.2
50.9
45.8
Minor BPS
55.8
0.16
1.6
65.97
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014990
Chromosome:
PEDO01009401.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015612
21 - 1781
1761