Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009413.1_1419_2216_F

Intron Information:

Intron Rank:

145358

Intron Class:

major

Intron Phase:

Intron Coordinates:

1419 - 2216

Intron Length:

798

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCAGCC

5'SS Class:

major

3'SS Sequence:

CATTTTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTTTTTATAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.44

1.2

59.6

38.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.76

0.8

77.2

36.8

Minor 5ss

43.3

-0.7

3.2

60.2

44.5

Minor BPS

58.3

0.34

1.7

76.11

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028357

Chromosome:

PEDO01009413.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030289

823 - 3391

2569