Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009420.1_4594_5254_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4594 - 5254

Intron Length:

661

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTAAGTCTG

5'SS Class:

major

3'SS Sequence:

GGTGTCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAC

U12 Branch Point Sequence:

CCCCCTTTGACC

Flanking Amino Acid:

HTIQNSDDAYVQLDNLPGMS

Intron Amino Acid Position:

212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

1.3

72.7

44.5

Major BPS

74.1

0.6

66.7

39.9

Major PPT

69.2

0.43

0.9

39.9

Minor 5ss

39.2

-1.2

49.6

39.9

Minor BPS

57.7

0.22

1.3

58.4

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028811

Chromosome:

PEDO01009420.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019573

2943 - 5887

2945