Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009428.1_1301_1336_F

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

1301 - 1336

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTGTCCATG

5'SS Class:

weak_minor

3'SS Sequence:

AGTAGTGTGAGAG|A

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

TGTCCAT

U12 Branch Point Sequence:

GTCCATGTGAGT

Flanking Amino Acid:

QTSSDVKMGTTVWMALMKQT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

47.5

-0.1

1.2

45.6

43.8

Major BPS

62.1

0.3

1.4

72.5

43.5

Major PPT

-0.3

1.8

46.8

Minor 5ss

57.4

0.25

2.4

75.1

Minor BPS

38.5

-0.8

2.2

53.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020175

Chromosome:

PEDO01009428.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040447

696 - 1429

734