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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009464.1_11234_15291_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11234 - 15291
Intron Length:
4058

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCATGTTGA
5'SS Class:
major
3'SS Sequence:
CACCATGTATGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TCATACTGACAG
Flanking Amino Acid:
MRSEGNLSDLNESSFDPIT
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.3
60.6
40.8
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
45.7
-0.2
1.7
50.4
42.2
Minor 5ss
37.8
-1.4
3.9
52.7
44.8
Minor BPS
43
-0.6
2
47.59
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001172
Chromosome:
PEDO01009464.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001160
11207 - 16257
5051