Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009476.1_38264_38742_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38264 - 38742

Intron Length:

479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTATCAT

U12 Branch Point Sequence:

AGTTGTATCATT

Flanking Amino Acid:

VRPELGDLSKVTKVKTDRPI

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

1.1

75.8

Major BPS

70.5

0.51

1.3

41.2

Major PPT

95.4

1.02

0.6

88.7

28.3

Minor 5ss

-0.3

2.5

62.8

41.8

Minor BPS

42.7

-0.4

2.2

63.49

41.4

Associated Gene:

Gene:

NDUFA8

Ensembl Gene ID:

ENSAPLG00000018695

Chromosome:

PEDO01009476.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042476

36587 - 40190

3604