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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009476.1_38909_39773_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38909 - 39773
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GGTTGCTGAACG
Flanking Amino Acid:
QVNQCALDFFRKIKTHCAEP
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
63.1
43.4
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
32.8
-2
3
41.9
44.9
Minor BPS
53.7
-0
2
62.22
44.9

Associated Gene:

Gene:
NDUFA8
Ensembl Gene ID:
ENSAPLG00000018695
Chromosome:
PEDO01009476.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042476
36587 - 40190
3604