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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009490.1_1846_4219_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1846 - 4219
Intron Length:
2374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGCGGGGT
5'SS Class:
weak_major
3'SS Sequence:
CTTGCTGCCCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AGCTTCTGACTG
Flanking Amino Acid:
AMVTRDCEVVNFLRALKGSA
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.6
0.13
1.1
48.7
42.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
58.9
0.2
1.1
56
39.2
Minor 5ss
25.7
-2.8
3.7
33
43.5
Minor BPS
45.6
-0.4
1.7
46.56
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025314
Chromosome:
PEDO01009490.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048040
165 - 4599
4435