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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009508.1_2493_2678_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2493 - 2678
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CTGTGAGAAACT
Flanking Amino Acid:
MINTVPFIITIFWPPLRNLF
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
80
34.6
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
80.6
0.69
0.8
73.1
37.3
Minor 5ss
42.8
-0.8
2.8
60.3
44.3
Minor BPS
38.4
-0.8
2.6
60.11
49.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026153
Chromosome:
PEDO01009508.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026561
32 - 3475
3444