Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009508.1_967_1084_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

967 - 1084

Intron Length:

118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGGGCC

5'SS Class:

major

3'SS Sequence:

CTCTCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAG

U12 Branch Point Sequence:

CTGAGCACAACA

Flanking Amino Acid:

NEFYAHPRLQDYYVVILCPT

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.3

34.6

Major BPS

50.8

0.02

1.4

49.1

Major PPT

86.3

0.82

0.7

84.1

23.9

Minor 5ss

25.9

-2.8

3.3

33.7

41.8

Minor BPS

42.1

-0.6

2.1

53.22

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026153

Chromosome:

PEDO01009508.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026561

32 - 3475

3444