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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009525.1_2132_2287_R

Intron Information:

Intron Rank:
135172
Intron Class:
major
Intron Phase:
Intron Coordinates:
2132 - 2287
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
76
34.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.4
0.62
0.7
69.1
31.4
Minor 5ss
33.3
-1.9
3.2
44.6
43.4
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020082
Chromosome:
PEDO01009525.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033384
866 - 2815
1950