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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009536.1_5862_6098_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5862 - 6098
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCCAAAA
5'SS Class:
weak_major
3'SS Sequence:
GGGCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTTCCTATTG
Flanking Amino Acid:
GDTVAQELLHRYEHNRTGSI
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.4
58.9
42
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
60.7
0.24
1
50
43.9
Minor 5ss
32.7
-2
3
40.8
45
Minor BPS
53.2
-0
2
67.42
40.8

Associated Gene:

Gene:
MEST
Ensembl Gene ID:
ENSAPLG00000007475
Chromosome:
PEDO01009536.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035492
3392 - 6303
2912
ENSAPLT00000007762
3392 - 6303
2912