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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009538.1_1038_1258_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1038 - 1258

Intron Length:

221

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACTGGGG

5'SS Class:

major

3'SS Sequence:

CTCCTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCCCAA

U12 Branch Point Sequence:

TGGTGCTTTGCT

Flanking Amino Acid:

TRLEMLEIIEAIYKMVGTVI

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.4

1.1

51.7

45.2

Major BPS

45.3

-0.2

1.2

35.2

Major PPT

81.9

0.72

0.7

76.4

25.6

Minor 5ss

27.6

-2.6

3.6

38.4

46.6

Minor BPS

38.7

-0.8

3.7

68.5

Associated Gene:

Gene:

HPCAL4

Ensembl Gene ID:

ENSAPLG00000029002

Chromosome:

PEDO01009538.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032345

508 - 2387

1880