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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009538.1_678_821_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
678 - 821
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCTTG
5'SS Class:
major
3'SS Sequence:
CTCCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCGAT
U12 Branch Point Sequence:
CCGTTTCGATCT
Flanking Amino Acid:
LEEFQQLYIKFFPYGDASKF
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.8
42.7
Major BPS
73.7
0.59
1.3
72.5
43.5
Major PPT
74.8
0.56
0.7
69
24.8
Minor 5ss
40.6
-1
3.3
54.5
49.7
Minor BPS
40.5
-0.6
1.8
52.1
43.2

Associated Gene:

Gene:
HPCAL4
Ensembl Gene ID:
ENSAPLG00000029002
Chromosome:
PEDO01009538.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032345
508 - 2387
1880