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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009554.1_445_1208_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
445 - 1208
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCACCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGGTAATTAATT
Flanking Amino Acid:
SHQLRQLTEKVQNISQSMEV
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.5
0.48
0.8
64.8
30.3
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
58.1
0.33
1.8
75.18
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030517
Chromosome:
PEDO01009554.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018741
265 - 1566
1302