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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009561.1_1710_2161_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1710 - 2161
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATCCAT
U12 Branch Point Sequence:
AGGCAGGTAACT
Flanking Amino Acid:
SLGNVLFLVPVCVTFLGRFY
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
57.2
0.18
1.3
68.1
38
Major PPT
85.7
0.8
0.7
77.3
31.5
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
39.4
-0.7
2.5
57.61
44.6

Associated Gene:

Gene:
MANF
Ensembl Gene ID:
ENSAPLG00000014995
Chromosome:
PEDO01009561.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015617
21 - 2304
2284