Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009561.1_764_1581_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

764 - 1581

Intron Length:

818

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCCCTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

GCATCTCCACCT

Flanking Amino Acid:

KEAKGKENRLCYYVGATSDA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

77.8

0.63

0.7

70.1

30.9

Minor 5ss

37.6

-1.4

2.8

48.3

42.5

Minor BPS

42.9

-0.4

58.41

44.4

Associated Gene:

Gene:

MANF

Ensembl Gene ID:

ENSAPLG00000014995

Chromosome:

PEDO01009561.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015617

21 - 2304

2284