Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009564.1_28859_29333_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28859 - 29333

Intron Length:

475

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGACAGCC

5'SS Class:

major

3'SS Sequence:

GTGTCCTGGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCAGCAC

U12 Branch Point Sequence:

TGCCCCAGCACT

Flanking Amino Acid:

HPSPCPGDREVSSTDTVLAE

Intron Amino Acid Position:

337

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

Major BPS

41.5

-0.5

1.3

37.8

Major PPT

60.8

0.24

1.1

54.1

45.8

Minor 5ss

31.8

-2.1

3.3

42.5

44.5

Minor BPS

44.4

-0.3

2.1

64.42

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026761

Chromosome:

PEDO01009564.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034164

27934 - 31345

3412

ENSAPLT00000027418

27290 - 30441

3152