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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009564.1_31497_31636_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
31497 - 31636
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGTGGGCC
5'SS Class:
weak_major
3'SS Sequence:
TGCTCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CAGCCCCTGACT
Flanking Amino Acid:
SPPGSLPRGPAAWCVLPARV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.3
44.8
37.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
76.7
0.6
0.8
69.9
30.9
Minor 5ss
33
-1.9
3.5
45.7
43.1
Minor BPS
51.8
0.14
1.7
66.54
43.9

Associated Gene:

Gene:
WDR54
Ensembl Gene ID:
ENSAPLG00000007631
Chromosome:
PEDO01009564.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033926
30939 - 35400
4462
ENSAPLT00000025004
30939 - 35400
4462
ENSAPLT00000007907
30939 - 35400
4462