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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009564.1_31700_31827_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31700 - 31827
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CAGCTCTCACCC
Flanking Amino Acid:
LVLTSQKGVQMYESDGSVMV
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
84.2
0.77
0.7
76.8
31.8
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
44.4
-0.4
1.8
48.57
41.3

Associated Gene:

Gene:
WDR54
Ensembl Gene ID:
ENSAPLG00000007631
Chromosome:
PEDO01009564.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033926
30939 - 35400
4462
ENSAPLT00000025004
30939 - 35400
4462
ENSAPLT00000021518
30939 - 35400
4462