Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009564.1_31895_32229_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

31895 - 32229

Intron Length:

335

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTCCAGCACAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTCCAG

U12 Branch Point Sequence:

CCTTCCAGCACA

Flanking Amino Acid:

HALDVTEQPQAVFARGISAA

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

46.4

-0.2

1.7

61.8

44.5

Major PPT

52.6

0.06

1.1

50.4

37.4

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

46.3

-0.3

2.2

60.88

44.9

Associated Gene:

Gene:

WDR54

Ensembl Gene ID:

ENSAPLG00000007631

Chromosome:

PEDO01009564.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025004

30939 - 35400

4462