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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009564.1_32281_32513_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32281 - 32513
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GGTCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TCCCCACTGACA
Flanking Amino Acid:
SAAGERFICVGTSSGTVLVF
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
66.3
0.37
0.9
58.5
33
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
46.4
-0.2
1.9
58.09
41.1

Associated Gene:

Gene:
WDR54
Ensembl Gene ID:
ENSAPLG00000007631
Chromosome:
PEDO01009564.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025004
30939 - 35400
4462
ENSAPLT00000021518
30939 - 35400
4462
ENSAPLT00000007907
30939 - 35400
4462