About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009564.1_34796_34922_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34796 - 34922
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTTCCCTCCACA
Flanking Amino Acid:
ALDLAPLTGKLLSGAEDSFV
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
78.1
0.63
0.7
72.2
26
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
53.1
0.09
2
69.11
43.1

Associated Gene:

Gene:
WDR54
Ensembl Gene ID:
ENSAPLG00000007631
Chromosome:
PEDO01009564.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033926
30939 - 35400
4462
ENSAPLT00000025004
30939 - 35400
4462
ENSAPLT00000021518
30939 - 35400
4462
ENSAPLT00000007907
30939 - 35400
4462